MmuEX6074852 @ mm9
Exon Skipping
Gene
ENSMUSG00000028199 | Cryz
Description
crystallin, zeta [Source:MGI Symbol;Acc:MGI:88527]
Coordinates
chr3:154281424-154284738:+
Coord C1 exon
chr3:154281424-154281573
Coord A exon
chr3:154284445-154284552
Coord C2 exon
chr3:154284643-154284738
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTTGTTCTTTTACCATGCAGATG
3' ss Score
9.57
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
Exon sequences
Seq C1 exon
GTTGGATTAGCTACATGCCAGATTGCCAGAGCTCATGGCTTAAAGGTTTTGGGCACAGCTGGTTCTGAGGAAGGAAAAAAGCTTGTTCTGCAAAACGGAGCCCACGAAGTGTTTAATCACAAAGAAGCCAACTATATTGATAAAATCAAG
Seq A exon
ATGTCTGTTGGTGACAAGGACAAGGGGGTTGATGTGATTATTGAGATGCTGGCGAATGAGAACCTTAGCAATGACCTGAAGCTTCTGTCCCACGGAGGACGGGTCGTC
Seq C2 exon
GTTGTTGGCTGTCGAGGTCCCATTGAGATAAACCCAAGGGACACCATGGCAAAAGAAACAAGCATCATTGGGGTCTCTCTCTCTTCTTCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028199-'15-11,'15-10,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122423=Eno-Rase_NADH_b=FE(29.3=100)
A:
PF0010721=ADH_zinc_N=FE(26.7=100)
C2:
PF0010721=ADH_zinc_N=FE(23.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTAGCTACATGCCAGATTGC
R:
TGGTGGAAGAAGAGAGAGAGACC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: