MmuEX6074852 @ mm10
Exon Skipping
Gene
ENSMUSG00000028199 | Cryz
Description
crystallin, zeta [Source:MGI Symbol;Acc:MGI:88527]
Coordinates
chr3:154618460-154621774:+
Coord C1 exon
chr3:154618460-154618609
Coord A exon
chr3:154621481-154621588
Coord C2 exon
chr3:154621679-154621774
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTTGTTCTTTTACCATGCAGATG
3' ss Score
9.57
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
Exon sequences
Seq C1 exon
GTTGGATTAGCTACATGCCAGATTGCCAGAGCTCATGGCTTAAAGGTTTTGGGCACAGCTGGTTCTGAGGAAGGAAAAAAGCTTGTTCTGCAAAACGGAGCCCACGAAGTGTTTAATCACAAAGAAGCCAACTATATTGATAAAATCAAG
Seq A exon
ATGTCTGTTGGTGACAAGGACAAGGGGGTTGATGTGATTATTGAGATGCTGGCGAATGAGAACCTTAGCAATGACCTGAAGCTTCTGTCCCACGGAGGACGGGTCGTC
Seq C2 exon
GTTGTTGGCTGTCGAGGTCCCATTGAGATAAACCCAAGGGACACCATGGCAAAAGAAACAAGCATCATTGGGGTCTCTCTCTCTTCTTCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028199-'18-18,'18-17,22-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PD(31.0=25.5),PF0010721=ADH_zinc_N=PU(37.7=96.1)
A:
PF0010721=ADH_zinc_N=FE(26.7=100)
C2:
PF0010721=ADH_zinc_N=FE(23.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTAGCTACATGCCAGATTGC
R:
TGGTGGAAGAAGAGAGAGAGACC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types