GgaEX0017094 @ galGal3
Exon Skipping
Gene
ENSGALG00000011361 | CRYZ
Description
NA
Coordinates
chr8:30436085-30436829:-
Coord C1 exon
chr8:30436680-30436829
Coord A exon
chr8:30436274-30436375
Coord C2 exon
chr8:30436085-30436180
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTTATTCTGGGTAGGAA
3' ss Score
6.46
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTGGGAATAGCAGCATGTCAGATTGCCAGAGCTTATGGCTTGAAGGTTTTGGGCACAGCGGGAACCGAGCAGGGTATGAACGTTGTTCTGAGAAATGGTGCTCACCAAGCATTTAATCACAGAGAAGCTAACTATCTTGACAAAATTATG
Seq A exon
GAATATACCAAGATGCAAGGAGTTAATATAATAATAGAAATGCTCTCCAATGTCAATCTGGCTGCTGACCTGCATCTGCTGTCCCATGCAGGAAGGGTGATG
Seq C2 exon
GTTGTCGGCTGCAGAGGTCCCATTGAGATAAATCCCAGAGACACCATGAACAAAGAGTCCAGCATAAGAGGAGTTAGTCTGTTTCTTCAGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361-'11-9,'11-8,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(38.0=100)
A:
PF0010721=ADH_zinc_N=FE(25.6=100)
C2:
PF0010721=ADH_zinc_N=FE(24.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAATAGCAGCATGTCAGA
R:
AAACAGACTAACTCCTCTTATGCTGG
Band lengths:
234-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]