DreEX6025832 @ danRer10
Exon Skipping
Gene
ENSDARG00000016074 | cryz
Description
crystallin, zeta (quinone reductase) [Source:ZFIN;Acc:ZDB-GENE-050306-24]
Coordinates
chr2:11326415-11329282:-
Coord C1 exon
chr2:11329133-11329282
Coord A exon
chr2:11326593-11326694
Coord C2 exon
chr2:11326415-11326510
Length
102 bp
Sequences
Splice sites
3' ss Seq
TATTTGATTTACTGTTTAAGGAT
3' ss Score
7.39
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GTAGGCATTGCAGCGTGTCAGATCGCACGAGCGTTTGGTCTTAAAGTCCTGGGTACAGCAGGTACTCCTGAAGGGATGAAGCTGGTGCTCAATAATGGAGCTCATCTTGCTTTCAACCACAGAGAAAAAGACTACTTGGAGAAAATTAAG
Seq A exon
GATACGACTAATGGACTTGGGGTGAATGTGATCATAGAGATGTTGTCCAACGTCAACCTGAGTAATGATCTTCAGTTGCTTGATTTCGGTGGCAGAGTTATA
Seq C2 exon
ATTGTTGGCTCTAGAGGCCCGATTGAGATTAACCCCAGAGACACCATGATGAAAGAGTCCAGTGTCATTGGTGTGGCTTTGCACTTTGCAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016074-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(38.3=100)
A:
PF0010721=ADH_zinc_N=FE(25.8=100)
C2:
PF0010721=ADH_zinc_N=FE(24.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGCATTGCAGCGTGTCAG
R:
AGTGCAAAGCCACACCAATGA
Band lengths:
234-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]