GgaEX0017094 @ galGal4
Exon Skipping
Gene
ENSGALG00000011361 | CRYZ
Description
quinone oxidoreductase [Source:RefSeq peptide;Acc:NP_001073231]
Coordinates
chr8:28534565-28535309:-
Coord C1 exon
chr8:28535160-28535309
Coord A exon
chr8:28534754-28534855
Coord C2 exon
chr8:28534565-28534660
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTTATTCTGGGTAGGAA
3' ss Score
6.46
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTGGGAATAGCAGCATGTCAGATTGCCAGAGCTTATGGCTTGAAGGTTTTGGGCACAGCGGGAACCGAGCAGGGTATGAACGTTGTTCTGAGAAATGGTGCTCACCAAGCATTTAATCACAGAGAAGCTAACTATCTTGACAAAATTATG
Seq A exon
GAATATACCAAGATGCAAGGAGTTAATATAATAATAGAAATGCTCTCCAATGTCAATCTGGCTGCTGACCTGCATCTGCTGTCCCATGCAGGAAGGGTGATG
Seq C2 exon
GTTGTCGGCTGCAGAGGTCCCATTGAGATAAATCCCAGAGACACCATGAACAAAGAGTCCAGCATAAGAGGAGTTAGTCTGTTTCTTCAGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(38.0=100)
A:
PF0010721=ADH_zinc_N=FE(25.6=100)
C2:
PF0010721=ADH_zinc_N=FE(24.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAATAGCAGCATGTCAGA
R:
AAACAGACTAACTCCTCTTATGCTGG
Band lengths:
234-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]