RnoEX6012022 @ rn6
Exon Skipping
Gene
ENSRNOG00000028319 | Cryz
Description
crystallin zeta [Source:RGD Symbol;Acc:1311639]
Coordinates
chr2:260906562-260910465:+
Coord C1 exon
chr2:260906562-260906711
Coord A exon
chr2:260910176-260910277
Coord C2 exon
chr2:260910370-260910465
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTTCTTATCACGCAGACG
3' ss Score
8.5
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTTGGATTAGCTACATGCCAGATTGCCAGAGCTCATGGCTTAAAGGTTTTGGGCACAGCTGGTTCTGAGGAAGGAAAAAAGCTTGTTCTGCAAAACGGAGCCCACGAAGTGTTTAATCACAAAGAAGCCAACTATATTGATAAAATCAAG
Seq A exon
ACGTCTGCTGGTGACAAGGGCGTTGATGTGATTATTGAGATGCTGGCGAACAAGAACCTCAGCAATGACCTGAAGCTCCTGTCCTGCGGAGGGCGGGTCATT
Seq C2 exon
GTCGTTGGCTGTAGAGGTTCCATTGAGATAAACCCAAGGGACACCATGGCCAAAGAGACGAGTATAATCGGAGTCTCTCTCTTTTCATCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028319-'19-16,'19-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(38.6=100)
A:
PF0010721=ADH_zinc_N=FE(26.0=100)
C2:
PF0010721=ADH_zinc_N=FE(24.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGATTAGCTACATGCCAGA
R:
GTGGATGAAAAGAGAGAGACTCCG
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]