BtaEX0010931 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003530 | DDX31
Description
Bos taurus DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 (DDX31), mRNA. [Source:RefSeq mRNA;Acc:NM_001101886]
Coordinates
chr11:102736197-102750308:-
Coord C1 exon
chr11:102750132-102750308
Coord A exon
chr11:102747480-102747539
Coord C2 exon
chr11:102736197-102736247
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCTTGTTTTTGTAGGAA
3' ss Score
10.72
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
TTTGAGAGAGACCAGAAGGTGATCGTCTTCTTCTCAAGTTGCGAGCTGGTGGAGTTCCACTACACCCTCTTCCTCCAGACCCTGCTGAGTGGCTCAGGGGCCCTGGCCCCAGAGCATTTGCCATCCACCTCCACGCCGTTAAAATTCCTGCGGCTGCACAGCGCCCTGGAGCAAGAG
Seq A exon
GAAAGAACAGCAGTGTTTCAAGATTTCACGCATTCCAAAACAGGCATTCTTTTTTGCACG
Seq C2 exon
GATATTGCAGCTCGGGGCTTGGATCTCCCTCAAGTCACATGGATTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003530-'19-21,'19-18,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PU(21.3=27.1)
A:
PF0027126=Helicase_C=FE(25.3=100)
C2:
PF0027126=Helicase_C=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTCCAGACCCTGCTGAG
R:
ACTTGAGGGAGATCCAAGCCC
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development