GgaEX1019120 @ galGal4
Exon Skipping
Gene
ENSGALG00000003534 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr17:6605998-6626622:-
Coord C1 exon
chr17:6626446-6626622
Coord A exon
chr17:6624256-6624315
Coord C2 exon
chr17:6605998-6606109
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTCATCCTCTAGGAA
3' ss Score
11.74
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TATGAAAAGCAACATAAGATGATCATCTTTTTCTCCAGTTGTGAACAAGTGGAATTCCACTACGAGCTCCTTGTTAATGTCCTTTCAGGAGAGCTAGAGTCTGAACAACCTAAACGTTCATCTGTCTCCTCTGTGCAATTACAGTTTCTACGACTGCATGGGAACATGGAACAGGAA
Seq A exon
GAAAGAACAGAGGTCTTCCAGGAGTTCCTAAAATCCAAAACCGGCATCTTACTTTGCACT
Seq C2 exon
AAATCCTATGGCGTGGACCCTCAGGAAGTCCGGGAGCGGGCCACAGTCCTGCAGACACAATTTGAGAATTATGTTCACTCCAGTGAGGGGACCATCCGGTGGGCAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534_MULTIEX1-9/15=8-14
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PU(21.3=27.1)
A:
PF0027126=Helicase_C=FE(25.3=100)
C2:
PF139591=DUF4217=PU(33.8=57.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTCCACTACGAGCTCCT
R:
AGGGTCCACGCCATAGGATTT
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]