MmuEX0014082 @ mm10
Exon Skipping
Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28860716-28874181:+
Coord C1 exon
chr2:28860716-28860892
Coord A exon
chr2:28863716-28863775
Coord C2 exon
chr2:28874131-28874181
Length
60 bp
Sequences
Splice sites
3' ss Seq
GGCTTTTCCTGTTTCTGCAGGAA
3' ss Score
10.37
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
TTTGAGAAGAACCAGAAGATGATTGTCTTTTTCTCAAGTTGTGAATTGGTGGAGTTCCACTACAGCCTCTTCCTTCACACCCTGCTTTGCCACTCAGGGACCCCTACTTCAGAGCATCTGCCATCTGCCTCCTGGCCACTGAAATTCCTTCGGCTGCATGGCAACATGGAACAGGAG
Seq A exon
GAAAGAACATCCGTGTTTCATGAGTTCTCCCATTCTGAAACGGGAGTCTTGCTCTGCACG
Seq C2 exon
GATGTTGCATCTCGAGGCTTGGATCTCCCACAAGTCACCTGGATTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806_MULTIEX3-9/9=8-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PU(20.3=25.4)
A:
PF0027126=Helicase_C=FE(25.7=100)
C2:
PF0027126=Helicase_C=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTCACACCCTGCTTTGC
R:
GGGAGATCCAAGCCTCGAGAT
Band lengths:
137-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types