RnoEX0026856 @ rn6
Exon Skipping
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7443770-7456483:+
Coord C1 exon
chr3:7443770-7443946
Coord A exon
chr3:7446459-7446518
Coord C2 exon
chr3:7456433-7456483
Length
60 bp
Sequences
Splice sites
3' ss Seq
GACTTTTCCCATTTCTGCAGGAA
3' ss Score
10.58
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTTGAGAAGGACCAGAAGATGATTGTCTTTTTCTCAAGTTGTGAGCTGGTAGAGTTCCACTACAACCTCTTCCTTCACACCCTGCTTTGCCACTCCGGGACCCCTGCTTCAGAGACGCTGCCATCTGCCTCCTGGCCACTGAAATTCCTTCGGCTGCATGGCAACATGAAGCAGGAG
Seq A exon
GAAAGAACTTCTGTGTTTCATGAGTTCTCACATTCTGGAACTGGAGTCCTACTCTGCACA
Seq C2 exon
GATGTTGCATCTCGAGGCTTGGATCTCCCACAAGTCACCTGGATTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040-'15-23,'15-21,16-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PU(20.3=25.4)
A:
PF0027126=Helicase_C=FE(25.7=100)
C2:
PF0027126=Helicase_C=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTCACACCCTGCTTTGC
R:
GGGAGATCCAAGCCTCGAGAT
Band lengths:
137-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]