DreEX0026231 @ danRer10
Exon Skipping
Gene
ENSDARG00000035507 | ddx31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]
Coordinates
chr5:29120670-29126325:+
Coord C1 exon
chr5:29120670-29120834
Coord A exon
chr5:29123744-29123803
Coord C2 exon
chr5:29126275-29126325
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTACTTTTTTTAGGAG
3' ss Score
9.32
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
TTTGAGCAGCGTCAGAAGTTGATCATCTTCATATCCAGCTGTGAAGCTGTAGAGTTTCTGCTCAATCTCTTTACTGCAGTCCTCTGTGAAATTCCCAGCAACACCTCATCTAAAAGTACCTCATGCCTCAACTTCTACAGACTGCATGGCAACATGAGACAGGAG
Seq A exon
GAGCGCACTGAAGTCTTCCAAGAGTTCTCTCAGTGTAAAACTGGCATTCTGCTGTGTACG
Seq C2 exon
GATGTAGCTGCACGTGGTTTGGATTTGCCTCAGGTTACTTGGATTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035507_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PU(22.4=30.9)
A:
PF0027126=Helicase_C=FE(25.0=100)
C2:
PF0027126=Helicase_C=PU(42.1=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTTACTGCAGTCCTCTGTGA
R:
TGAGGCAAATCCAAACCACGT
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]