GgaEX1019120 @ galGal3
Exon Skipping
Gene
ENSGALG00000003534 | F1NM06_CHICK
Description
NA
Coordinates
chr17:7255444-7264599:-
Coord C1 exon
chr17:7264423-7264599
Coord A exon
chr17:7262232-7262291
Coord C2 exon
chr17:7255444-7255494
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTCATCCTCTAGGAA
3' ss Score
11.74
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TATGAAAAGCAACATAAGATGATCATCTTTTTCTCCAGTTGTGAACAAGTGGAATTCCACTACGAGCTCCTTGTTAATGTCCTTTCAGGAGAGCTAGAGTCTGAACAACCTAAACGTTCGTCTGTCTCCTCTGTGCAATTACAGTTTCTACGACTGCATGGGAACATGGAACAGGAA
Seq A exon
GAAAGAACAGAGGTCTTCCAGGAGTTCCTAAAATCCAAAACCGGCATCTTACTTTGCACT
Seq C2 exon
GATGTCGCAGCACGTGGACTAGACCTGCCTCAAGTCACGTGGATTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534-'13-18,'13-16,14-18=AN
Average complexity
A_S
Mappability confidence:
78%=100=60%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PU(21.3=27.1)
A:
PF0027126=Helicase_C=FE(25.3=100)
C2:
PF0027126=Helicase_C=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCTAGAGTCTGAACAACC
R:
ACAATCCACGTGACTTGAGGC
Band lengths:
137-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]