HsaEX6063667 @ hg38
Exon Skipping
Gene
ENSG00000125485 | DDX31
Description
DEAD-box helicase 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr9:132632041-132646071:-
Coord C1 exon
chr9:132645895-132646071
Coord A exon
chr9:132642004-132642063
Coord C2 exon
chr9:132632041-132632091
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCCTTGTTTTTGTAGGAA
3' ss Score
10.66
5' ss Seq
ACGGTACGT
5' ss Score
11.34
Exon sequences
Seq C1 exon
TTTGAGGAAGACCAGAAGATGGTTGTCTTTTTCTCAAGTTGCGAGCTGGTGGAGTTCCACTACAGCCTCTTCCTACAGACCCTGCTGAGCAGCTCAGGGGCGCCGGCATCAGGGCAGTTGCCATCTGCCTCCATGCGATTAAAATTCCTACGGCTGCATGGCGGCATGGAGCAGGAG
Seq A exon
GAAAGAACAGCAGTGTTTCAGGAATTTTCACATTCCAGAAGAGGCGTCCTTCTTTGCACG
Seq C2 exon
GATGTTGCAGCTCGGGGCTTAGATCTCCCTCAAGTCACGTGGATTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-'25-27,'25-21,32-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PU(43.2=27.1)
A:
PF0027126=Helicase_C=FE(51.4=100)
C2:
PF0027126=Helicase_C=FE(21.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTCTTCCTACAGACCC
R:
GAGGGAGATCTAAGCCCCGAG
Band lengths:
147-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains