BtaEX0011901 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046957 | DOK6
Description
docking protein 6 [Source:HGNC Symbol;Acc:HGNC:28301]
Coordinates
chr24:7927126-8100346:-
Coord C1 exon
chr24:8100281-8100346
Coord A exon
chr24:7958582-7958689
Coord C2 exon
chr24:7927126-7927240
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTTATTTCCTTTCAGATT
3' ss Score
11.17
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATGGCCTCCAACTTTAACGACATAGTCAAGCAGGGCTACGTGAAAATCCGCAGCAGGAAGCTGGGG
Seq A exon
ATTTTCAGACGATGCTGGTTGGTTTTCAAGAAGGCATCTAGTAAAGGACCCAGAAGGCTAGAAAAATTTCCCGATGAGAAGGCAGCATATTTCAGGAACTTTCATAAG
Seq C2 exon
GTAACTGAACTGCACAACATCAAAAACATAACCAGGCTGCCTCGAGAGACAAAGAAGCATGCAGTGGCAATTATCTTTCATGATGAAACGTCAAAGACATTTGCCTGTGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046957-'0-2,'0-0,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.5=63.6)
A:
PF0016924=PH=FE(33.7=100)
C2:
PF0016924=PH=FE(36.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTCCAACTTTAACGACA
R:
TGATTCACAGGCAAATGTCTTTGA
Band lengths:
179-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development