DreEX0028061 @ danRer10
Exon Skipping
Gene
ENSDARG00000063032 | dok6
Description
docking protein 6 [Source:ZFIN;Acc:ZDB-GENE-070410-50]
Coordinates
chr24:14792774-14887439:+
Coord C1 exon
chr24:14792774-14792977
Coord A exon
chr24:14875984-14876091
Coord C2 exon
chr24:14887325-14887439
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTGCATCTTTCTTTAACAGATC
3' ss Score
10.12
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TCGCGCGGAATGAGCGTTTCGCCGGTCGCAGCAGCAGCGGCAGTGGAGGCGGTGCGGCGGAGCCTCTCGGGCAGGTTGTTTGAGGACTAAATGTCGTACTGACTTCTTAGGAGACGAGGACAGACAGAGGCTGTCAGGATGGCTTCAAACTTCAACGATATAGTCAAGCAGGGCTACGTGCGGATTCGGAGTAAGAAACTGGGG
Seq A exon
ATCTTCAGAAGATGCTGGCTTGTGTTCAAAAAGGCGTCTAGTAAAGGTCCACGGCGATTAGAGAAATATCCAGATGAAAAAGCGGCTTACTTCAGAAGCTTTCACAAG
Seq C2 exon
ATAACCGAGCTCCACAACATAAAGAACATCACACGAATGCCACGAGAGACCAAGAAACACGCAGTGGCCATTATTTTCTGTGATGAGACGTCAAAGACATTTGCCTGTGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063032_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.5=63.6)
A:
PF0016924=PH=FE(33.7=100)
C2:
PF0016924=PH=FE(36.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCGGGCAGGTTGTTTGAG
R:
GGCAAATGTCTTTGACGTCTCA
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]