RnoEX0029446 @ rn6
Exon Skipping
Gene
ENSRNOG00000038190 | Dok6
Description
docking protein 6 [Source:RGD Symbol;Acc:1564376]
Coordinates
chr18:86685160-86878142:-
Coord C1 exon
chr18:86878032-86878142
Coord A exon
chr18:86719516-86719623
Coord C2 exon
chr18:86685160-86685274
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTTATTTGCTTTCAGATA
3' ss Score
9.89
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TCCGGGGAGCGGATCGCCCAGCAGAGGAGCCCGACCGCGCTGGCCATGGCCTCCAACTTTAACGACATAGTCAAGCAGGGATACGTGAAAATCCGCAGCAGGAAGCTCGGG
Seq A exon
ATATTCAGACGATGCTGGTTAGTTTTTAAGAAGGCTTCTAGCAAGGGACCCAGAAGGCTAGAAAAGTTTCCAGATGAAAAGGCAGCTTATTTCAGAAACTTTCACAAG
Seq C2 exon
GTAACTGAACTGCACAACATCAAAAATATAACCAGGCTGCCTCGAGAGACAAAGAAGCATGCAGTGGCAATTATCTTTCATGACGAAACGTCAAAGACATTTGCTTGTGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038190_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.5=63.6)
A:
PF0016924=PH=FE(33.7=100)
C2:
PF0016924=PH=FE(36.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGCCCAGCAGAGGA
R:
TCACAAGCAAATGTCTTTGACGT
Band lengths:
211-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]