GgaEX1020775 @ galGal3
Exon Skipping
Gene
ENSGALG00000013753 | DOK6
Description
NA
Coordinates
chr2:96265185-96287231:-
Coord C1 exon
chr2:96287219-96287231
Coord A exon
chr2:96285097-96285204
Coord C2 exon
chr2:96265185-96265299
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCATTGACTTTGTTTCCAGATT
3' ss Score
7.97
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CAGGCAGTTGCAT
Seq A exon
ATTTTCAGGCGATGTTGGTTGGTTTTCAAGAAGGCTTCCAGTAAAGGACCCAGGAGGCTAGAAAAGTTTCCAGATGAGAAGGCAGCATATTTCAGAAACTTCCACAAG
Seq C2 exon
GTAACCGAGCTGCACAATATCAAAAACATAACTAGATTGCCTCGAGAGACAAAGAAACATGCAGTGGCGATTATCTTTCATGATGAGACGTCAAAGACATTTGCGTGTGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013753-'2-2,'2-1,3-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(4.0=100)
A:
PF0016924=PH=FE(35.0=100)
C2:
PF0016924=PH=FE(38.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]