HsaEX6039291 @ hg19
Exon Skipping
Gene
ENSG00000206052 | DOK6
Description
docking protein 6 [Source:HGNC Symbol;Acc:28301]
Coordinates
chr18:67068291-67266734:+
Coord C1 exon
chr18:67068291-67068546
Coord A exon
chr18:67231723-67231830
Coord C2 exon
chr18:67266620-67266734
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTTATTTGCTTTCAGATT
3' ss Score
9.97
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTCCCCGTCCGCGGCGGCCCTGCAGGCGACCCCGCGTCCCCACCGGCGGGAGCTCGGGGAAGAGCGGGCGGCGGCGCTGCTGCTGGCGGCGGCCGGCTGGATGCGAGACCCGCGCAGACCCGGCGGCGGACGGCGGCTCTCGACTCCGGAGAGCGGATCGCGGGGCGCAGGAGCCCGATCGCGCTGGCCATGGCCTCCAACTTTAACGACATAGTCAAGCAGGGCTACGTGAAAATCCGCAGCAGGAAGCTTGGG
Seq A exon
ATTTTCAGACGATGCTGGTTGGTTTTCAAGAAGGCTTCTAGCAAAGGACCCAGAAGGTTAGAAAAATTTCCAGATGAAAAGGCAGCTTATTTCAGAAACTTTCATAAG
Seq C2 exon
GTAACTGAACTGCACAATATCAAAAATATAACCAGACTGCCCCGAGAGACAAAGAAGCATGCGGTGGCAATCATCTTTCACGATGAAACATCGAAGACATTTGCCTGTGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206052-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.5=63.6)
A:
PF0016924=PH=FE(33.7=100)
C2:
PF0016924=PH=FE(36.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGCTCGGGGAAGAG
R:
CTCTCGGGGCAGTCTGGTTAT
Band lengths:
257-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)