GgaEX1020775 @ galGal4
Exon Skipping
Gene
ENSGALG00000013753 | DOK6
Description
docking protein 6 [Source:HGNC Symbol;Acc:HGNC:28301]
Coordinates
chr2:93864229-93981838:-
Coord C1 exon
chr2:93981446-93981838
Coord A exon
chr2:93884141-93884248
Coord C2 exon
chr2:93864229-93864343
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCATTGACTTTGTTTCCAGATT
3' ss Score
7.97
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCTGCCCCTCCCGCTCCCCGGCTGTAGGCGCGGGCAGCCGCGGAGCGGGGCTGGCAGGCAGGGCGGTGGCGGCCGAGGTGAGGTGAGGGGCCGGTGGAAGAGTCGAGGACCTTCTGCCACTGGGGTCGGCGCGGAGCGGAACCCGCGGGAGGAGCGCGGGGCGGAGCAGAGCGGAGCGCGGCCCCGCCGCTGCCTGGATGCCAGAGGCGTCTCGGGAGCCGGCGGCCGGCGGCACCCAGGAGGGCCCGGGGAAGGAGGAAGAGGCAGCAGAGGAGGAGGTGGAGGAGGACTCCGGGCGCGGAGGGGAGGAAGCAGACAGCGCTGGCCATGGCCTCCAACTTTAACGATATAGTCAAACAGGGCTACGTGAAAATTCGCAGCAGGAAGCTGGGG
Seq A exon
ATTTTCAGGCGATGTTGGTTGGTTTTCAAGAAGGCTTCCAGTAAAGGACCCAGGAGGCTAGAAAAGTTTCCAGATGAGAAGGCAGCATATTTCAGAAACTTCCACAAG
Seq C2 exon
GTAACCGAGCTGCACAATATCAAAAACATAACTAGATTGCCTCGAGAGACAAAGAAACATGCAGTGGCGATTATCTTTCATGATGAGACGTCAAAGACATTTGCGTGTGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013753-'1-5,'1-3,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0225710=RFX_DNA_binding=PU(52.5=95.5)
A:
PF0016924=PH=FE(33.7=100)
C2:
PF0016924=PH=FE(36.5=100)
Main Skipping Isoform:
ENSGALT00000022344fB6929
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGGAAGAGGCAGCAGA
R:
CACACGCAAATGTCTTTGACGT
Band lengths:
252-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]