MmuEX0015495 @ mm9
Exon Skipping
Gene
ENSMUSG00000073514 | Dok6
Description
docking protein 6 [Source:MGI Symbol;Acc:MGI:3639495]
Coordinates
chr18:89729395-89938920:-
Coord C1 exon
chr18:89938463-89938920
Coord A exon
chr18:89768076-89768183
Coord C2 exon
chr18:89729395-89729509
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTTATTTGCTTTCAGATA
3' ss Score
9.89
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGGGAGCCGCGATGGTGCGCTCCGGCCAGCTGTGCGCCGCCGAGTGAGGCGCCAGCCTGTGGGTGCTGCCGGGGGCGGTGGCGCGGAGGGGGGTACAACTGGCGGTGGCGCGGGTCGCGGTGCTCCGCTTGTGGCCGGGGGCGAAGGTGACGACGGGTCGCGAGGTGCTGGTGCTGCTGAGCAGTTCCGGGCCCGGATCCCTTGTCTCCGTGTGTGGCGGCCCAGCTATCGACCCCGGGTCCGCGCCAGCAGGAGCCTGGGGAGAAATCAGCGGCGGCGCGACTGCTGGCGGCGGCCGGCTGGATGCGAGACCTGCGTGGACCGGGCGGCGGACAGCGGTTGTCGACTCCGAGAAGCGGATCGCCCAGCAGAGGAACCCGACCGCTCTGGCCATGGCCTCCAACTTTAACGACATAGTCAAGCAGGGCTACGTGAAAATCCGCAGCAGGAAGCTAGGG
Seq A exon
ATATTCAGACGATGCTGGTTGGTTTTTAAGAAGGCTTCTAGCAAGGGACCCAGAAGGCTAGAAAAGTTTCCAGATGAAAAGGCAGCTTATTTCAGAAACTTTCACAAG
Seq C2 exon
GTAACTGAACTGCACAACATCAAAAATATAACCAGACTGCCTCGAGAGACAAAGAAGCATGCAGTGGCAATTATCTTTCATGACGAAACGTCAAAGACATTTGCTTGTGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073514-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.5=63.6)
A:
PF0016924=PH=FE(33.7=100)
C2:
PF0016924=PH=FE(36.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCCTGGGGAGAAATCAG
R:
GTCTCTCGAGGCAGTCTGGTT
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: