BtaEX0011984 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015330 | DPP4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MU57]
Coordinates
chr2:34555218-34558897:+
Coord C1 exon
chr2:34555218-34555272
Coord A exon
chr2:34555889-34555988
Coord C2 exon
chr2:34558833-34558897
Length
100 bp
Sequences
Splice sites
3' ss Seq
TAACTGTTTCCATTTCTTAGTCA
3' ss Score
6.13
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ACAGTTTTCAAAAATGGGATTTGTGGACGACAAACGGATTGCAATTTGGGGCTGG
Seq A exon
TCATACGGAGGGTACGTAACCTCAATGGTGCTGGGAGCAGGAAGTGGTGTGTTCAAGTGTGGAATAGCCGTGGCGCCTGTATCCAAGTGGGAGTACTATG
Seq C2 exon
ACTCCGTGTACACAGAACGTTACATGGGTCTTCCAACTCCAGAAGACAACCTTGACTCTTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015330-'36-36,'36-35,37-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.114
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(12.2=100)
A:
PF0032616=Peptidase_S9=FE(15.9=100)
C2:
PF0032616=Peptidase_S9=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAAAATGGGATTTGTGGACGAC
R:
CCTGTAAGAGTCAAGGTTGTCT
Band lengths:
114-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development