RnoEX6017060 @ rn6
Exon Skipping
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48305546-48308976:-
Coord C1 exon
chr3:48308922-48308976
Coord A exon
chr3:48308260-48308359
Coord C2 exon
chr3:48305546-48305610
Length
100 bp
Sequences
Splice sites
3' ss Seq
TAACTGTTTCCATTCCCCAGTCA
3' ss Score
7.21
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GCAATTTTTAAAAATGGGATTTGTGGACAGCAAGCAAGTTGCAATTTGGGGCTGG
Seq A exon
TCATATGGAGGGTACGTAACCTCAATGGTCCTGGGATCGGGAAGTGGCGTGTTCAAGTGTGGAATAGCCGTGGCGCCCGTGTCACGGTGGGAGTACTATG
Seq C2 exon
ACTCAGTATACACAGAGCGTTACATGGGTCTCCCAACTCCAGAGGACAACCTTGACCATTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763-'26-30,'26-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.076
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(8.6=100)
A:
PF0032616=Peptidase_S9=FE(15.8=100)
C2:
PF0032616=Peptidase_S9=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAAAATGGGATTTGTGGACAGCA
R:
CCTGTAATGGTCAAGGTTGTCC
Band lengths:
114-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]