HsaEX0020846 @ hg19
Exon Skipping
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl-peptidase 4 [Source:HGNC Symbol;Acc:3009]
Coordinates
chr2:162862255-162865805:-
Coord C1 exon
chr2:162865751-162865805
Coord A exon
chr2:162865072-162865171
Coord C2 exon
chr2:162862255-162862319
Length
100 bp
Sequences
Splice sites
3' ss Seq
TAACTGTTTCCATTCCTTAGTCA
3' ss Score
6.11
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ACAATTTTCAAAAATGGGATTTGTGGACAACAAACGAATTGCAATTTGGGGCTGG
Seq A exon
TCATATGGAGGGTACGTAACCTCAATGGTCCTGGGATCGGGAAGTGGCGTGTTCAAGTGTGGAATAGCCGTGGCGCCTGTATCCCGGTGGGAGTACTATG
Seq C2 exon
ACTCAGTGTACACAGAACGTTACATGGGTCTCCCAACTCCAGAAGACAACCTTGACCATTACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(8.7=100)
A:
PF0032616=Peptidase_S9=FE(15.9=100)
C2:
PF0032616=Peptidase_S9=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAAAATGGGATTTGTGGACAACA
R:
TCTGTAATGGTCAAGGTTGTCT
Band lengths:
114-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)