GgaEX1020894 @ galGal3
Exon Skipping
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22742696-22746309:+
Coord C1 exon
chr7:22742696-22742750
Coord A exon
chr7:22744831-22744930
Coord C2 exon
chr7:22746239-22746309
Length
100 bp
Sequences
Splice sites
3' ss Seq
CAGCAATGTTTTCTTCTCAGTCT
3' ss Score
5.23
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
AACATTTTCTGAAATGAGCTTTGTTGATAAGGACAGAATAGCTATTTGGGGTTGG
Seq A exon
TCTTATGGGGGATATGTGACCTCCATGGTGCTTGGCTCTGGAAGCGGCGTGTTCAAGTGTGGAATAGCGGTTGCCCCTGTGTCACGTTGGCAATATTATG
Seq C2 exon
TTACAGACTCAATATACACAGAGCGATACATGGGCCTTCCTACAGAAAGTGATAATCTGAGAAACTATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110-'25-34,'25-33,26-34=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(8.7=100)
A:
PF0032616=Peptidase_S9=FE(15.9=100)
C2:
PF0032616=Peptidase_S9=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAATGAGCTTTGTTGATAAGGA
R:
AGATTATCACTTTCTGTAGGAAGGCC
Band lengths:
106-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]