MmuEX0015592 @ mm10
Exon Skipping
Gene
ENSMUSG00000035000 | Dpp4
Description
dipeptidylpeptidase 4 [Source:MGI Symbol;Acc:MGI:94919]
Coordinates
chr2:62345056-62348555:-
Coord C1 exon
chr2:62348501-62348555
Coord A exon
chr2:62347818-62347917
Coord C2 exon
chr2:62345056-62345120
Length
100 bp
Sequences
Splice sites
3' ss Seq
TAACTGTTTCCATTCCCCAGTCA
3' ss Score
7.21
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GCAATTTGTAAAAATGGGATTTGTGGATAGCAAGCGAGTTGCAATTTGGGGCTGG
Seq A exon
TCATATGGAGGGTATGTAACCTCAATGGTCCTGGGATCGGGAAGTGGCGTGTTCAAGTGCGGAATAGCTGTGGCACCTGTGTCACGGTGGGAGTACTATG
Seq C2 exon
ACTCAGTGTACACAGAGCGTTACATGGGTCTCCCAATTCCAGAAGACAACCTTGACCATTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035000-'43-38,'43-33,44-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(16.5=100)
A:
PF0032616=Peptidase_S9=FE(15.7=100)
C2:
PF0032616=Peptidase_S9=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATTTGTAAAAATGGGATTTGTGG
R:
ATGGTCAAGGTTGTCTTCTGGA
Band lengths:
114-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types