GgaEX1020894 @ galGal4
Exon Skipping
Gene
ENSGALG00000011110 | DPP4
Description
dipeptidyl peptidase 4 [Source:RefSeq peptide;Acc:NP_001026426]
Coordinates
chr7:20664363-20674014:+
Coord C1 exon
chr7:20664363-20664557
Coord A exon
chr7:20667349-20667448
Coord C2 exon
chr7:20673942-20674014
Length
100 bp
Sequences
Splice sites
3' ss Seq
CAGCAATGTTTTCTTCTCAGTCT
3' ss Score
5.23
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTATGCAGGACCCTGTAGTCAGAAAGTAGATCATGTATTCCGGATTAACTGGGCTACGTACCTTGCCAGTACAGAGCAGATCATTGTGGCCAGCTTTGATGGCAGAGGAAGTGGGTACCAGGGGGATGAGATCATGCATGCAATAAACCGAAGACTGGGAACTTATGAAGTGGAAGATCAGATTTCAGCAGCCAG
Seq A exon
TCTTATGGGGGATATGTGACCTCCATGGTGCTTGGCTCTGGAAGCGGCGTGTTCAAGTGTGGAATAGCGGTTGCCCCTGTGTCACGTTGGCAATATTATG
Seq C2 exon
AGTTCAACGGTAATGGCCAGAGCTGAAAAATTCAAGGAAGTTGAGTATCTCCTTATCCATGGAACAGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(25.0=78.8)
A:
PF0032616=Peptidase_S9=FE(15.9=100)
C2:
PF0032616=Peptidase_S9=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCTGTAGTCAGAAAGT
R:
TGCTGTTCCATGGATAAGGAGA
Band lengths:
258-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]