BtaEX0014043 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031044 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr3:67111022-67116449:-
Coord C1 exon
chr3:67116313-67116449
Coord A exon
chr3:67113762-67113888
Coord C2 exon
chr3:67111022-67111155
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCCATCCAATTTTAGGTC
3' ss Score
11.73
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
GTTCAAGTTGTTCCAGTAGCAGACAGAATTTGACATTATCTTTAAGTTCTGCCAAAGACAAAGGATCTCAGTCTTGTAACTATGTTAATGGAGGACTCTTCAGTAAATACTCGGGTTCTGCACAGAGTTTAGCCTCT
Seq A exon
GTCCAGAGTGTCAATTCTTGTCATAGCTGTGCTTGTGGCAATTCTAATTCCTGGGACAAAGCAGATGAAGATGATATTAAACTTGTTAATATTCCTGTGACGACTCCTGAGAACTTATATTTGATGG
Seq C2 exon
GTATGGAATTGTTTGAAGAGGCATTGCGTCGATGGGAACAAGCTCTAACCTTTCGAAATAGACAGGCTGAAGATGAAGCCTGTGGTTCCATTAAATTGGGTGCAGGAGATGCTATTGCAGAAGAAAGTGTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031044-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(8.2=100)
A:
PF102654=DUF2217=FE(7.7=100)
C2:
PF102654=DUF2217=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTTGTTCCAGTAGCAGACA
R:
TCTCCTGCACCCAATTTAATGGA
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development