MmuEX0018453 @ mm10
Exon Skipping
Gene
ENSMUSG00000054942 | Miga1
Description
mitoguardin 1 [Source:MGI Symbol;Acc:MGI:1924567]
Coordinates
chr3:152320610-152333617:-
Coord C1 exon
chr3:152333481-152333617
Coord A exon
chr3:152322350-152322476
Coord C2 exon
chr3:152320610-152320743
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCCATTGGCCTTCATTTCAGGTC
3' ss Score
9.52
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GTTCGAGTTGCTCCAGCAGTCGGCAGAATCTGACCTTGTCGTTAAGCTCCACCAAGGAGAAAGGATCTCAGTGTTGCAACTACCCGAATGGAGGGCTTCTCAGCAGATACTCGGGCTCTGCCCAGAGCCTGGGCTCC
Seq A exon
GTCCAGAGTGTTAACTCCTGTCATAGTTGTGCTTGTGGAAATTCTAATTCCTGGGACAAAGCAGACGATGATGACATCAGACTTGTTAACATTCCTGTGACCACACCTGAGAACTTATACCTGATGG
Seq C2 exon
GTATGGAATTATTTGAAGAGGCGTTACGACGATGGGAACAAGCTCTGACTTTTCGAAGTAGACAGGCTGAAGATGAAGCCTGCAGCTCTGTTAAACTGGGAGCCGGAGATGCCATTGCAGAAGAAAGTGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054942_MULTIEX2-2/8=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(16.0=100)
A:
PF102654=DUF2217=FE(14.9=100)
C2:
PF102654=DUF2217=FE(15.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGAATCTGACCTTGTCG
R:
CCACACTTTCTTCTGCAATGGC
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types