GgaEX0013111 @ galGal3
Exon Skipping
Gene
ENSGALG00000008951 | FAM73A
Description
NA
Coordinates
chr8:19676007-19678136:-
Coord C1 exon
chr8:19678000-19678136
Coord A exon
chr8:19676585-19676711
Coord C2 exon
chr8:19676007-19676143
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAAATTGTATTTATTTTTAGGTT
3' ss Score
9.23
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GTTCAAGTTGTTCCAGTAGCCGACAAAACTTGACGCTTTCCCTGAGCTCTGCCAAGGAAAAAGGATCACAGTCATGTATCTATGCAAATGGAGGGCTTTTCAGTAAATACTCTGGTTCAGTTCAGAGTCTGGTCTCG
Seq A exon
GTTCAGAGTGCCACCTCTTGTCACAGTTGTGCTTGTGCCAATTCTAATTCCTGGGATAAAGCAGATGAAGAGGACATTAAGCTTGTTAATATTCCAGTGACTACACCTGAAAATTTATATTTGATGG
Seq C2 exon
GTATGGAACTGTTTGAAGAAGCACTGCGTCGATGGGAGCAGGCATTAACTTTCCGTAACAGGCAAGTGGAAGATGAAGCAAGCTGTAGTTCCATCAAGCTGGGAGCAGGAGATGCAATTGCAGAAGAAAGTGTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008951-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(8.2=100)
A:
PF102654=DUF2217=FE(7.7=100)
C2:
PF102654=DUF2217=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTGTTCCAGTAGCCGACA
R:
ATCTCCTGCTCCCAGCTTGAT
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]