RnoEX6011958 @ rn6
Exon Skipping
Gene
ENSRNOG00000056332 | Miga1
Description
mitoguardin 1 [Source:RGD Symbol;Acc:1559958]
Coordinates
chr2:257538643-257542457:-
Coord C1 exon
chr2:257542321-257542457
Coord A exon
chr2:257540377-257540503
Coord C2 exon
chr2:257538643-257538776
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCCATCGGTCTTTGTTTCAGGTC
3' ss Score
11.66
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GTTCGAGCTGTTCCAGTAGCAGGCAGAACTTGACCTTGTCATTAAGTTCCACCAAAGACAAAGGGTCTCAGTCTTGCAACTACCCGAATGGAGGACTTCTCAGCAGATACTCGGGTTCTGCCCAGAGCTTGGGCTCT
Seq A exon
GTCCAGAGTGTTAACTCCTGTCATAGTTGTGCTTGTGGAAATTCTAATTCCTGGGACAAAGCAGATGATGATGACGTCAGACTTGTTAACATTCCTGTGACCACTCCTGAGAACTTGTACTTGATGG
Seq C2 exon
GCATGGAACTATTTGAAGAGGCGTTACATCGATGGGAGCAAGCGCTGACTTTTCGAAGTAGGCAGGCGGAAGACGAAGCCTGCAGCTCTGTTAAACTGGGAGCCGGAGATGCCATTGCGGAAGAAAGTGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056332-'6-6,'6-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.070 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(38.1=100)
A:
PF102654=DUF2217=FE(14.9=100)
C2:
PF102654=DUF2217=FE(15.7=100)
Main Skipping Isoform:
ENSRNOT00000089370fB8738
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCAGAACTTGACCTTGT
R:
TTCTTCCGCAATGGCATCTCC
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]