DreEX0031953 @ danRer10
Exon Skipping
Gene
ENSDARG00000020596 | fam73a
Description
family with sequence similarity 73, member A [Source:ZFIN;Acc:ZDB-GENE-041010-193]
Coordinates
chr2:8880482-8883229:-
Coord C1 exon
chr2:8883120-8883229
Coord A exon
chr2:8882904-8883039
Coord C2 exon
chr2:8880482-8880618
Length
136 bp
Sequences
Splice sites
3' ss Seq
AATGGCACGTGCTCTTTCAGGTG
3' ss Score
9.24
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
AGAGTGACAGTCAAAGTGTGCCTCAGAACTCAGAGAACCCCTACACGTGTAATGTGGTGTCCGGGGCCCTGTACAACAAGCTTTCAGGCTCACTGCCAAGTCTGGTTTCT
Seq A exon
GTGAGGAGCAGGCACTCCTCTAGCAGCTCTACGTGTGCTAATGGTTCCAATTGTTGGGAAGAAGCAGGAGACGCCGCTGACGTCTGTAACCTGCTCAGCCTCCCTGTCGCCACCCCAGAGAATCTCTACCTGATGG
Seq C2 exon
GAATGGAGTTGTTCGAGGAAGCCTTGCGGCGATGGGAGCAGGCATTAACGTTCCGCAGCAGACAAGCAGAAGACGAGGGTAGCTGCGTATCCGTGAAGCTCGGAGCTGGAGACGCCATTGCAGAGGAAAGCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020596-'4-8,'4-6,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(22.9=100)
A:
PF102654=DUF2217=FE(28.7=100)
C2:
PF102654=DUF2217=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACAGTCAAAGTGTGCCT
R:
CATGCTTTCCTCTGCAATGGC
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]