HsaEX0024618 @ hg38
Exon Skipping
Gene
ENSG00000180488 | MIGA1
Description
mitoguardin 1 [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr1:77803270-77813867:+
Coord C1 exon
chr1:77803270-77803406
Coord A exon
chr1:77806975-77807101
Coord C2 exon
chr1:77813734-77813867
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTATCCATCTTAATTTTAGGTC
3' ss Score
9.86
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
GTTCAAGTTGTTCCAGTAGCAGACAGAATTTGACATTATCTTTAAGTTCTACCAAAGACAAAGGATCTCAAGTTTGTAACTATGCTAATGGAGGACTTTTCAGTAAATATTCAGGTTCTGCACAGAGTTTGGCCTCT
Seq A exon
GTCCAGAGTGTCAATTCTTGTCATAGCTGCGCTTGTGGCAATTCTAATTCCTGGGACAAAGCAGATGAAGATGATATTAAACTTGTTAATATTCCTGTGACTACTCCAGAGAACTTATACTTAATGG
Seq C2 exon
GTATGGAATTGTTTGAAGAGGCATTGCGTCGATGGGAACAAGCTCTGACCTTTCGCAATAGACAGGCTGAAGATGAAGCCTGTGGTTCCATTAAACTGGGTGCAGGAGATGCCATTGCTGAAGAAAATGTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(8.2=100)
A:
PF102654=DUF2217=FE(7.7=100)
C2:
PF102654=DUF2217=FE(8.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTTCCAGTAGCAGACAGA
R:
TCTTCAGCAATGGCATCTCCTG
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development