HsaEX0024618 @ hg19
Exon Skipping
Gene
ENSG00000180488 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:24741]
Coordinates
chr1:78267016-78279552:+
Coord C1 exon
chr1:78267016-78267193
Coord A exon
chr1:78272660-78272786
Coord C2 exon
chr1:78279419-78279552
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTATCCATCTTAATTTTAGGTC
3' ss Score
9.86
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
ATCAAATTTTCTCCGGTGGCTAAAAAGTTGTTTGTGGTAACTGCAGTGAGTGCTATATCTGTAATTTTTCTGGCTCATCACTTTAAAAGAAAACGTGGAAAGAAGAAAGGAAAAATATTACCATGGGAACCAGAGCACCTCATACTTGAATACACTAAAAGAGCAGCATCAGACAAAG
Seq A exon
GTCCAGAGTGTCAATTCTTGTCATAGCTGCGCTTGTGGCAATTCTAATTCCTGGGACAAAGCAGATGAAGATGATATTAAACTTGTTAATATTCCTGTGACTACTCCAGAGAACTTATACTTAATGG
Seq C2 exon
GTATGGAATTGTTTGAAGAGGCATTGCGTCGATGGGAACAAGCTCTGACCTTTCGCAATAGACAGGCTGAAGATGAAGCCTGTGGTTCCATTAAACTGGGTGCAGGAGATGCCATTGCTGAAGAAAATGTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=PD(78.0=94.1)
A:
PF102654=DUF2217=FE(7.7=100)
C2:
PF102654=DUF2217=FE(8.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCGGTGGCTAAAAAGTTGT
R:
ACCACAGGCTTCATCTTCAGC
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)