BtaEX0017172 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001252 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr23:44142113-44166200:-
Coord C1 exon
chr23:44166025-44166200
Coord A exon
chr23:44161398-44161499
Coord C2 exon
chr23:44142113-44142606
Length
102 bp
Sequences
Splice sites
3' ss Seq
AAACATTCTTTTCCCTTAAGGAA
3' ss Score
6.61
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATATAAATCAAATGAAGAGTATGTATATGTCCGAGGCAGGGGAAGAGGAAAGTACATTTGTGAAGAATGCGGAATCCGCTGTAAGAAACCTAGCATGTTAAAGAAACACATACGAACCCACACAGATGTCCGCCCCTACCACTGCACTTACTGTAACTTCTCCTTTAAGACGAAAG
Seq A exon
GAAATCTGACAAAACACATGAAGTCCAAGACACATAGCAAGAAATGTCTGGATTTAGGCGTCTCAGTAGGTTTAATAGATGAACAAGATACAGAAGAATCAG
Seq C2 exon
ACGAGAAACAGAGGTTCAGTTTTGAGAGGTCTGGATACGACCCGGAGGAATCCGACGGCGCCGAGGACGACGACATCGAGAACGAGGAGGAGGACGAGGACAGCCAGGCCGAGTCGGTGCTGTCGGCCGCGCCCTCCGCCGCCGCCAGCCCACAGCATCTGCCGGCCAGGGGCGGCCCTGGGGACCCCACGGGTGCGGACGAGGATGCCAGCGCCCCCGAGGGTTCTCCTGGGGGGCCCACGGACGCGATGGACGTGCTGCCAAGGGCACTGCCCACGAAGATGACGGTGCTGAGCGCGCTGCCGTCCGACCGCGGCGGGAGCCCGGGGTCCCCTGGCAGCGCCGGGCCGCGGGCAGCGGGCAATGCGGAGGCAGCCGCTCGCCCACCCGAGGGGGCGCCCAGGTCCCCGTGTCACCAGATGTCTGTGGACTACCCCAACCCCAAGGAGATGCTGAGCGGCTCTGCAGCAGGAAAGGCTGTGGCTTTAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001252_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.186 C2=1.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATATGTCCGAGGCAGGGG
R:
CCTCCTCCTCGTTCTCGATGT
Band lengths:
248-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development