GgaEX1028722 @ galGal4
Exon Skipping
Gene
ENSGALG00000012739 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr2:62797765-62809889:-
Coord C1 exon
chr2:62809714-62809889
Coord A exon
chr2:62807170-62807274
Coord C2 exon
chr2:62797765-62798282
Length
105 bp
Sequences
Splice sites
3' ss Seq
GCTTTTATTTGTTTCCTAAGGAA
3' ss Score
7.56
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTACAAATCAAATGAAGACTATGTGTATGTTCGGGGGAGAGGAAGAGGGAAATATATCTGTGAAGAATGTGGAATACGTTGCAAGAAGCCTAGTATGCTGAAGAAGCATATTCGCACACATACAGATGTCCGTCCTTATCATTGCAATTACTGCAACTTCTCCTTCAAAACTAAAG
Seq A exon
GAAATTTGACAAAACATATGAAGTCAAAGGCACATAGCAAGAAGTGCATGGATTTGGGAGTCTCGGTAGGCTTAATAGATGACCAGGATGGAGAAGAAGAATTTG
Seq C2 exon
GAGAGAAGCAAAGATTGGGCTGTGATCGGTCAGGGTTTGATGCGGAGGAATCTGACGGTGCAGATGAAGATGAAAATGACAACGAAGATGATGATGAAGACAGCCAAGCTGAGTCAGTCCTATCCACAACCCCCTCGGTGACAGCCAGCCCCCAGCATCACCCCTCTCGACATGGCCTGCAGGATGCCACAAGTGCTGATGAGGACAGCAGACTGCCGGACTGCTTTGGCGGGATTCACACGGACTCTATGGATGGTCTCCCAAAAGCGCTGCTCACAAAGATGACTGTCCTTAGTGCTGCGCAGTCGGTTAGCAGGACCTCCAGGTCACCAGCAGAGTTTACCCACCAGGAAGAAAATGAGGACAAAGCCCAGGAGAGGGGAGCTGGTCCCCACAGTGCAAGTAGTGCACTGGTAGACTCTGCTCCTGCATCTCCAGGTCGCCATATGTCCGTGGATTACCCCGATCCGGAAACAACTGTGGCCCACTCCTCCGTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012739-'17-30,'17-23,18-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.160 C2=0.988
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATACGTTGCAAGAAGCCT
R:
AGGGGGTTGTGGATAGGACTG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]