RnoEX0041984 @ rn6
Exon Skipping
Gene
ENSRNOG00000014460 | Hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:RGD Symbol;Acc:727847]
Coordinates
chr17:22281511-22303211:-
Coord C1 exon
chr17:22303043-22303211
Coord A exon
chr17:22299437-22299538
Coord C2 exon
chr17:22281511-22282016
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACATACTCTTTCCCCTTAAGGAA
3' ss Score
8.19
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TCAAATGAGGACTATGTATATGTCCGAGGCAGGGGCAGAGGAAAGTACATTTGTGAAGAATGTGGAATCCGTTGTAAGAAACCCAGTATGTTAAAGAAGCACATCCGAACCCACACTGATGTTCGCCCCTACCATTGCACTTACTGCAACTTCTCCTTCAAGACCAAAG
Seq A exon
GAAATCTGACAAAACACATGAAGTCCAAGGCACATAGCAAGAAGTGTGTGGATTTAGGCATCTCAGTGGGCTTGATAGATGAGCAGGACACAGAAGAATCAG
Seq C2 exon
ACGAAAAGCAAAGATTCGGTTGCGAGCGGTCTGGCTTTGATCTTGAAGAATCTGATGGCCCAGATGAGGATGATAATGACAACGAAGAGGATGATGACGATAGCCAGGCAGAGTCCGGCCTCTCAGCAGCACCGTCAGTCACAGCGAGCCCACAGCATCTCCCATCCAGAAGCGGCCTTCAGGATCCTGGGAGTGTAGAGGAGGACCTTAGAGTTTCCAGCTGCTTCTCAGGGGTACACACTGACCCAATGGACATTCTGCCTAGAGCATTACTCACCAAGATGACTGTTCTGAGCACGGTGCAGATTGACCCTAACAGGACAGACTTAACAGCAAAGGCCAGGCAGAATACTGGGAAAGATGAGCTTGAACTGGCTCCTCCTGTAGACACTCCCATCTCCCCAGAAGTTACCCCCAGGTCTCCCGGCCATCAGATGTCTGTGCATTACTCTGAATCTGATGCTCTGAGAAGCCCTGCAGCTGGAAACACTGTTGCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014460_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.959
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=45.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTGATGTTCGCCCCTAC
R:
ACACTCCCAGGATCCTGAAGG
Band lengths:
254-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]