HsaEX0030054 @ hg38
Exon Skipping
Gene
ENSG00000095951 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr6:12130767-12161929:+
Coord C1 exon
chr6:12130767-12130942
Coord A exon
chr6:12135791-12135892
Coord C2 exon
chr6:12161439-12161929
Length
102 bp
Sequences
Splice sites
3' ss Seq
AAACATTCTTTTCCCTTAAGGAA
3' ss Score
6.61
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATATAAGTCAAATGAAGAGTATGTATATGTCCGAGGCAGGGGAAGAGGAAAATACATTTGTGAAGAATGTGGAATACGTTGTAAGAAACCTAGCATGTTAAAGAAACACATACGAACCCATACAGATGTCCGCCCCTACCACTGCACTTACTGTAACTTCTCCTTTAAGACTAAAG
Seq A exon
GAAATCTGACAAAACACATGAAGTCCAAGGCACATAGCAAGAAATGTGTGGATTTAGGCGTCTCAGTAGGTTTAATAGATGAACAGGATACAGAAGAATCAG
Seq C2 exon
ATGAAAAACAGAGATTCAGTTATGAGCGATCTGGATATGATCTTGAAGAATCTGATGGCCCAGATGAGGATGACAATGAAAATGAAGACGATGATGAGGACAGCCAGGCTGAATCAGTCCTGTCAGCCACACCCTCAGTCACAGCTAGCCCGCAGCACCTTCCATCTAGAAGTAGCCTTCAGGACCCTGTGAGTACTGACGAGGATGTCAGGATCACCGATTGCTTTTCTGGGGTACACACGGACCCAATGGACGTTCTGCCCAGGGCGCTGCTCACCAGAATGACTGTCCTGAGCACAGCACAGTCTGACTACAATAGGAAGACACTCTCTCCGGGGAAGGCCAGGCAGCGTGCTGCGAGAGATGAAAACGACACAATTCCGTCTGTAGACACTTCCAGGTCCCCGTGTCATCAGATGTCTGTGGACTACCCTGAGTCAGAAGAAATTCTGAGAAGTTCTATGGCAGGAAAAGCTGTTGCTATAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095951_MULTIEX1-9/9=8-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.018 A=0.364 C2=0.966
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACAGATGTCCGCCCCTA
R:
CTCACAGGGTCCTGAAGGCTA
Band lengths:
252-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development