DreEX0037666 @ danRer10
Exon Skipping
Gene
ENSDARG00000103658 | hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-070912-512]
Coordinates
chr19:3447317-3449416:-
Coord C1 exon
chr19:3449241-3449416
Coord A exon
chr19:3448536-3448637
Coord C2 exon
chr19:3447317-3447861
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCTTTATCCACACAGGGA
3' ss Score
8.73
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
ATACAAATCAAACGAGGAGTATGTGTATGTACGGGGCCGCGGAAGAGGAAAATACATCTGTGAGGAATGTGGAATTCGCTGCAAGAAACCTAGCATGCTGCGGAAGCACATCCGTACACATTCAGATATCCGTCCATTTCACTGCACGCACTGCAACTTCTCTTTCAAAACTAAAG
Seq A exon
GGAACCTTACCAAGCACATGAAGTCCAAAGCCCACAGCAAGAAGTGCATGGAAATGGGAGTCGCTGTGGGTATTATTGAGGACCAGGACGCAGAAGACTCAG
Seq C2 exon
GTGATCGTGGAAGAGCAGGAAGTGCTGACAGACAGGACTCCGATGGGGATGACTCTGATGGCCCAGATGATGAAGATAATGAGGGAGAGGAGGAAGATGAGGAGGACAGCCAGGCAGAGTCTGGCCTTTCTGCTACACCTTCCGTTTCTGCAAGCCCACAGCACTTTTCTGCTAACCAGGCTGATTTGGCTCCCAGCTCTTTACTGGCTCAGATGTCCATCAGCCCAAATCCATCCCCAGCTCTGCAATCTCAGCCTCCTCCTACTTCGGACTCCCAGACATCAGATACAGAATCTGTGGCTATGACAAGCCCAGTTTCTTTGGTCAGACAGATGTCAATTTCTGCATCCTGTTCCAGCCCCGGCCCTAATCCAACCTCTTTTACATCCCACCCGACCCCTGCCTCAGAATCCCACACCTCTGATACTGACTCCGTACACATGATGAGCCCAGTGTCACCATGCAGGCAGATGTCTATCGACTACCCAGACTTTGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103658_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.829 C2=0.940
Domain overlap (PFAM):
C1:
PF065247=NOA36=PU(39.9=98.3),PF134651=zf-H2C2_2=WD(100=43.3)
A:
PF065247=NOA36=FE(23.0=100)
C2:
PF065247=NOA36=PD(36.5=29.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATGTGGAATTCGCTGCA
R:
GGAAGGTGTAGCAGAAAGGCC
Band lengths:
257-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]