MmuEX0022949 @ mm9
Exon Skipping
Gene
ENSMUSG00000021366 | Hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:MGI Symbol;Acc:MGI:96100]
Coordinates
chr13:42259586-42277300:+
Coord C1 exon
chr13:42259586-42259761
Coord A exon
chr13:42262931-42263032
Coord C2 exon
chr13:42276801-42277300
Length
102 bp
Sequences
Splice sites
3' ss Seq
AGACACTCTTTCCCCTCAAGGAA
3' ss Score
5.72
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATACAAGTCAAATGAGGATTACGTGTATGTCCGAGGCAGGGGAAGAGGAAAGTACATTTGTGAAGAGTGTGGAATACGTTGTAAGAAGCCTAGTATGTTGAAGAAGCACATCCGAACCCACACAGATGTCCGCCCCTACCACTGCTCTTACTGTAACTTCTCCTTCAAGACGAAAG
Seq A exon
GAAACCTGACAAAACACATGAAGTCCAAGGCGCACAGTAAGAAGTGTGTGGATTTAGGCGTCTCGGTGGGCTTGATAGACGAGCAGGACACAGAAGAATCAG
Seq C2 exon
ATGAAAAGCAAAGATTCGGTTGCGAGCGGTCTGGATATGATCTTGAAGAGTCTGATGGCCCAGATGAGGATGATAATGACAACGAAGAGGATGATGATGACAGCCAAGCAGAGTCTGGTCTCTCAGCAGCACCCTCAGTCACAGCGAGCCCACAGCATCTCCCATCCAGAAGTGGCCTTCAGGACCCTGGGAGTGTCGAGGAGGAGCTTAGAGTTTCCAGTTGCTTCTCAGGGGTACATACAGACCCAATGGACATTCTACCTAGAGCACTGCTCACCAAGATGACTGTTCTGAGCACAGTGCAGAGTAGCCCTAACAGGACAGACTTACCAGCAAAGGCCAGGCAGAGTACTGAGAAGGATGAGCATGAGCAGGCTCCTCCCGCAGACACCCCCAGGTCCCCCGGCCATCAGCTGTCTGTGCATTCCTCTGAATCCGATGTCCTGAGAAGTCCTGCAGCTGGAAACCCTGCCGCTGGAAGCCCTGGGGCTGCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021366-'13-9,'13-6,14-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.129 C2=0.970
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTACCACTGCTCTTACT
R:
TAAGCTCCTCCTCGACACTCC
Band lengths:
255-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: