GgaEX1028722 @ galGal3
Exon Skipping
Gene
ENSGALG00000012739 | HIVEP1
Description
NA
Coordinates
chr2:63856645-63868559:-
Coord C1 exon
chr2:63868384-63868559
Coord A exon
chr2:63865840-63865944
Coord C2 exon
chr2:63856645-63856952
Length
105 bp
Sequences
Splice sites
3' ss Seq
GCTTTTATTTGTTTCCTAAGGAA
3' ss Score
7.56
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTACAAATCAAATGAAGACTATGTGTATGTTCGGGGGAGAGGAAGAGGGAAATATATCTGTGAAGAATGTGGAATACGTTGCAAGAAGCCTAGTATGCTGAAGAAGCATATTCGCACACATACAGATGTCCGTCCTTATCATTGCAATTACTGCAACTTCTCCTTCAAAACTAAAG
Seq A exon
GAAATTTGACAAAACATATGAAGTCAAAGGCACATAGCAAGAAGTGCATGGATTTGGGAGTCTCGGTAGGCTTAATAGATGACCAGGATGGAGAAGAAGAATTTG
Seq C2 exon
GAGAGAAGCAAAGATTGGGCTGTGATCGGTCAGGGTTTGATGCGGAGGAATCTGACGGTGCAGATGAAGATGAAAATGACAACGAAGATGATGATGAAGACAGCCAAGCTGAGTCAGTCCTATCCACAACCCCCTCGGTGACAGCCAGCCCCCAGCATCACCCCTCTCGACATGGCCTGCAGGATGCCACAAGTGCTGATGAGGACAGCAGACTGCCGGACTGCTTTGGCGGGATTCACACGGACTCTATGGATGGTCTCCCAAAAGCGCTGCTCACAAAGATGACTGTCCTTAGTGCTGCGCAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012739-'3-9,'3-4,4-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.306 C2=1.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATACGTTGCAAGAAGCCT
R:
AGGGGGTTGTGGATAGGACTG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]