BtaEX0017184 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014898 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr7:39696704-39701103:-
Coord C1 exon
chr7:39700964-39701103
Coord A exon
chr7:39700765-39700884
Coord C2 exon
chr7:39696704-39696799
Length
120 bp
Sequences
Splice sites
3' ss Seq
GACTTGCTCCTACCCCGCAGCTC
3' ss Score
8.17
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGCGTGGGGACTTCCTGGCCCTGGACCTGGGGGGCACCAACTTTCGAGTCCTCCTGGTGCGTGTGACCACGGGAGGTGTGCAGATCTCCAGCCAGATCTATTCCATCCCGGAGTGCGTGGCCCAGGGCTCTGGACAGCAG
Seq A exon
CTCTTTGACCATATTGTGGACTGCATTGTGGACTTCCAGCAGAAGCAGGGCCTGAGTGGGCAGAGTCTCCCCCTGGGTTTCACCTTCTCCTTCCCGTGCAGGCAGATGGGCCTGGACCAG
Seq C2 exon
GGCATCCTCCTGAACTGGACAAAGGGTTTCAATGCATCTGACTGCGAGGGCCAAGACGTTGTGTGTCTGCTGCGGGAAGCCATCAGGCGCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014898-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.0=100)
A:
PF0034916=Hexokinase_1=FE(19.5=100)
C2:
PF0034916=Hexokinase_1=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGGGGACTTCCTGG
R:
CTGATGGCTTCCCGCAGC
Band lengths:
226-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development