GgaEX7008480 @ galGal4
Exon Skipping
Gene
ENSGALG00000027287 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr13:9650987-9651549:+
Coord C1 exon
chr13:9650987-9651126
Coord A exon
chr13:9651246-9651365
Coord C2 exon
chr13:9651454-9651549
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACCGCAGCCTCTCCCCACAGCTC
3' ss Score
8.7
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
AGAGAGGAAAATTCCTGGCGCTGGACCTGGGAGGGACCAATTTCCGTGTGCTGGTGGTGCACGTGGAAGAGGACAACATCCACATGGCCAATGAGATCTACGTCATCCCCACGGCTATCATGCAGGGCACCGGCGAGGCG
Seq A exon
CTCTTCGACCACATCATCGAGTGCATTGTGGACTTCCAGATAAAGCAGAAGCTGACGGGTCAGGTCCTGCCGCTTGGCTTCACCTTCTCCTTCCCCTGCCAGCAGCTGGGCCTGGACAAG
Seq C2 exon
GCTGTGCTGCTGACCTGGACCAAAGGCTTCAACGCCTCCGGCTGCGTAGGGCAGGACGTGGTTCAGATGCTGCGGGAGGCTGCGCAGCGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027287-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(22.7=100)
A:
PF0034916=Hexokinase_1=FE(19.2=100)
C2:
PF0034916=Hexokinase_1=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAATTCCTGGCGCTGGA
R:
CTCCCGCAGCATCTGAACC
Band lengths:
213-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]