HsaEX6101355 @ hg19
Exon Skipping
Gene
ENSG00000160883 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:4925]
Coordinates
chr5:176311040-176314338:-
Coord C1 exon
chr5:176314202-176314338
Coord A exon
chr5:176314003-176314122
Coord C2 exon
chr5:176311040-176311135
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGACCTGTCCTGCCCCACAGCTC
3' ss Score
11.15
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGCGAGGGGATTTCCTGGCCCTGGACCTCGGGGGCACGAACTTCCGTGTCCTCCTGGTACGTGTGACCACAGGCGTGCAGATCACCAGCGAGATCTACTCCATTCCCGAGACTGTGGCCCAGGGTTCTGGGCAGCAG
Seq A exon
CTCTTTGACCACATCGTGGACTGCATCGTGGACTTCCAGCAGAAGCAGGGCCTGAGCGGGCAGAGCCTCCCACTGGGTTTTACCTTCTCCTTCCCATGTAGGCAGCTTGGCCTAGACCAG
Seq C2 exon
GGCATCCTCCTGAACTGGACCAAGGGTTTCAAGGCATCAGACTGCGAGGGCCAAGATGTCGTGAGTCTGTTGCGGGAAGCCATCACTCGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160883-'13-20,'13-16,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(22.6=100)
A:
PF0034916=Hexokinase_1=FE(19.6=100)
C2:
PF0034916=Hexokinase_1=PU(55.4=96.9),PF0199611=F420_ligase=PU(17.0=56.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGATTTCCTGGCCCT
R:
CTGTCTGCGAGTGATGGCTTC
Band lengths:
230-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)