MmuEX6058526 @ mm9
Exon Skipping
Gene
ENSMUSG00000025877 | Hk3
Description
hexokinase 3 [Source:MGI Symbol;Acc:MGI:2670962]
Coordinates
chr13:55110314-55112396:-
Coord C1 exon
chr13:55112257-55112396
Coord A exon
chr13:55112058-55112177
Coord C2 exon
chr13:55110314-55110409
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGACATGCCCTCTCCTGCAGCTC
3' ss Score
10.06
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGCGAGGTGATTTCCTGGCCTTGGACCTAGGGGGCACCAACTTCCGGGTCCTGTTGGTACGAGTGGCGGAGGGCAGTGTGCAGATCATCAACCAGGTCTACTCCATTCCTGAGTGTAGAGCCCAGGGCTCTGGACAGAAG
Seq A exon
CTCTTTGACCATATTGTGGACTGCATCGTGGACTTCCAGAAGAGGCAGGGCCTTAGTGGACAGAGCCTACCCCTGGGTTTCACCTTCTCTTTCCCATGCAAGCAGCTTGGCCTGGACCAG
Seq C2 exon
GGCATCCTCCTGAATTGGACTAAGGGGTTCAATGCATCAGGCTGTGAGGGCCAGGATGTTGTGTATCTATTACGGGAAGCCATTAGGCGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025877-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.0=100)
A:
PF0034916=Hexokinase_1=FE(19.5=100)
C2:
PF0034916=Hexokinase_1=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGATTTCCTGGCCTTGG
R:
TGGCTTCCCGTAATAGATACACA
Band lengths:
219-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: