HsaEX6101355 @ hg38
Exon Skipping
Gene
ENSG00000160883 | HK3
Description
hexokinase 3 [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr5:176884039-176887337:-
Coord C1 exon
chr5:176887201-176887337
Coord A exon
chr5:176887002-176887121
Coord C2 exon
chr5:176884039-176884134
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGACCTGTCCTGCCCCACAGCTC
3' ss Score
11.15
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGCGAGGGGATTTCCTGGCCCTGGACCTCGGGGGCACGAACTTCCGTGTCCTCCTGGTACGTGTGACCACAGGCGTGCAGATCACCAGCGAGATCTACTCCATTCCCGAGACTGTGGCCCAGGGTTCTGGGCAGCAG
Seq A exon
CTCTTTGACCACATCGTGGACTGCATCGTGGACTTCCAGCAGAAGCAGGGCCTGAGCGGGCAGAGCCTCCCACTGGGTTTTACCTTCTCCTTCCCATGTAGGCAGCTTGGCCTAGACCAG
Seq C2 exon
GGCATCCTCCTGAACTGGACCAAGGGTTTCAAGGCATCAGACTGCGAGGGCCAAGATGTCGTGAGTCTGTTGCGGGAAGCCATCACTCGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160883-'23-33,'23-28,25-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(22.6=100)
A:
PF0034916=Hexokinase_1=FE(19.6=100)
C2:
PF0034916=Hexokinase_1=PU(55.4=96.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGATTTCCTGGCCCT
R:
CTGTCTGCGAGTGATGGCTTC
Band lengths:
230-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains