RnoEX6053100 @ rn6
Exon Skipping
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10147891-10149916:+
Coord C1 exon
chr17:10147891-10148030
Coord A exon
chr17:10148110-10148229
Coord C2 exon
chr17:10149821-10149916
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGACATGCCCTCTCCCGCAGCTC
3' ss Score
9.9
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AACGAGGTGACTTCCTGGCTTTGGACCTAGGGGGCACCAACTTCCGTGTCCTGTTGGTACGCGTGGCCGAGGGCAGTGTTCAGATCACCAACCAGGTCTACTCTATTCCTGAGTATGTAGCCCAGGGCTCTGGACAGAAG
Seq A exon
CTCTTTGATCATATTGTGGACTGCATCGTGGACTTCCAGAAGAGGCAAGGCCTTAGCGGACAGAGCCTACCCCTGGGTTTCACCTTCTCTTTTCCTTGCAAGCAGCTTGGCCTGGACCAG
Seq C2 exon
GGCATCCTCCTCAACTGGACTAAGGGGTTCAATGCATCAGGCTGCGAGGGCCAAGATGTTGTGTATTTATTACGGGAAGCCATTAGGCGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235-'17-19,'17-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.0=100)
A:
PF0034916=Hexokinase_1=FE(19.5=100)
C2:
PF0034916=Hexokinase_1=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGTGACTTCCTGGCTTT
R:
CCTAATGGCTTCCCGTAATAAATACA
Band lengths:
226-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]