BtaEX0018552 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009080 | ITGB6
Description
Bos taurus integrin, beta 6 (ITGB6), mRNA. [Source:RefSeq mRNA;Acc:NM_174698]
Coordinates
chr2:36325457-36336338:+
Coord C1 exon
chr2:36325457-36325679
Coord A exon
chr2:36328826-36328923
Coord C2 exon
chr2:36336219-36336338
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTATTGAATAATGTTCACAGGAG
3' ss Score
3.16
5' ss Seq
AAGGTTCTA
5' ss Score
1
Exon sequences
Seq C1 exon
ATAATGGCGACTGTGACTGTGGCGAGTGCGTGTGCAGGAGCGGCTGGACAGGAGAGTACTGTAACTGCACCACCAGCACAGACCCCTGTGTCTCCGAAGACGGGATCCTCTGCAGCGGCCGAGGGGACTGTGTGTGCGGCAAGTGCATTTGCACGAATCCTGGAGCCTCGGGACCCACCTGTGAACGTTGTCCCACCTGCGGCGATCCCTGCAACTCTAAACG
Seq A exon
GAGCTGCATTGAATGCTACCTGTCTGCAGATGGCCAGGCCCAAGAAGAATGTGTTGACAAATGCAAACTAGCTGGTGCGACCATCAATGAAGAAGAAG
Seq C2 exon
ATTTCTCAAAGGATAGCTTTGTTTCCTGTTCTCTGCAAGGAGAAAATGAATGCCTTATTACATTCCTACTTACTACAGATAATGAAGGGAAAACCGTCATTCACAGCATCAATGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009080-'19-19,'19-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.8=5.3)
A:
PF079657=Integrin_B_tail=FE(39.3=100)
C2:
PF079657=Integrin_B_tail=FE(47.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCACGAATCCTGGAGCC
R:
GCTGTGAATGACGGTTTTCCC
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development