MmuEX6101549 @ mm10
Exon Skipping
Gene
ENSMUSG00000026971 | Itgb6
Description
integrin beta 6 [Source:MGI Symbol;Acc:MGI:96615]
Coordinates
chr2:60611367-60620433:-
Coord C1 exon
chr2:60620211-60620433
Coord A exon
chr2:60616645-60616739
Coord C2 exon
chr2:60611367-60611486
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTGTCCTGTCCACAGGAG
3' ss Score
11.33
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
Exon sequences
Seq C1 exon
ATAACGGTGACTGTGACTGTGGCGAGTGTGTGTGCCGGGATGGCTGGACAGGTGAATACTGTAACTGTACAACCAACAGGGACTCGTGTACATCTGAGGATGGAGTGCTGTGCAGTGGACGTGGGGACTGTGTCTGTGGCAAGTGTGTCTGCAGAAACCCTGGAGCCTCAGGACCCACCTGTGAACGCTGTCCTACCTGTGGCGACCCCTGTAACTCTAAACG
Seq A exon
GAGTTGCATCGAGTGCTACCTGTCTGCAGATGGCCAGGCCCAAGAAGAGTGTGCTGACAAGTGTAAAGCCATTGGTGCCACCATCAGTGAGGAAG
Seq C2 exon
ATTTTTCAAAGGATACTTCTGTCTCCTGCTCTCTACAAGGAGAAAATGAATGCCTTATTACATTCCTAATAACTACGGATAATGAAGGGAAAACCATCATTCACAACATCAATGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026971-'30-32,'30-31,32-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.8=5.3)
A:
PF079657=Integrin_B_tail=FE(38.6=100)
C2:
PF079657=Integrin_B_tail=FE(48.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGATGGAGTGCTGTGC
R:
TCCTTGTAGAGAGCAGGAGACA
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types