DreEX0040184 @ danRer10
Exon Skipping
Gene
ENSDARG00000002494 | itgb6
Description
integrin, beta 6 [Source:ZFIN;Acc:ZDB-GENE-100812-2]
Coordinates
chr11:11025994-11034329:+
Coord C1 exon
chr11:11025994-11026216
Coord A exon
chr11:11031563-11031657
Coord C2 exon
chr11:11034213-11034329
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGTGTGTCCCGCAGGTC
3' ss Score
13.51
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GTCATGGGGAGTGTGACTGTGGTGAGTGTGTGTGTGACAGCGGCTGGATGGGTGAGTTCTGTAACTGCAGCACCAGTAACCGGTCGTGTGTGTCCTCGGATGGGTCAGTCTGCAGTGGACGGGGCAGGTGTGTGTGTGGGAAGTGTGAATGCAGTGTTCCTGGAGCCTCGGGCAAACACTGTGAAAGATGCCCAACGTGTGGAGACATCTGCAGCATACACAG
Seq A exon
GTCTTGTGCTGAGTGTTTCCTAAAAGCTAAAGAGCCGTCAGATGAGTGTGCTGTAAAGTGCAGCTCTCTACACACCGCCGTCAGCAATTCAACAG
Seq C2 exon
ATTTTGAGGAGAGTCGGGCAGCACCATGCACCTTACAAAGCGAGGAGAGTTGCCTGCTGTCTTTCAGCTTGGTAGCCAGCGATCACGGCAGCATCATTTACAACCCCAAGCTTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002494_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTAACCGGTCGTGTGTGTC
R:
CTGCCCGACTCTCCTCAAAAT
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]