RnoEX6017028 @ rn6
Exon Skipping
Gene
ENSRNOG00000008346 | Itgb6
Description
integrin beta 6 [Source:RGD Symbol;Acc:1303119]
Coordinates
chr3:46666196-46675658:-
Coord C1 exon
chr3:46675436-46675658
Coord A exon
chr3:46672607-46672701
Coord C2 exon
chr3:46666196-46666315
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTGTCCCGTCCACAGGAG
3' ss Score
10.46
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
Exon sequences
Seq C1 exon
ATAATGGTGACTGTGACTGTGGTGAATGCGTGTGCCGGGATGGCTGGACGGGCGAGTACTGCAACTGTACAACCAGCAGGGATGCGTGTGCATCGGAAGATGGCGTGCTGTGCAGCGGGCGTGGGGACTGTGTCTGCGGCAAGTGTGTCTGCAGAAACCCTGGAGCCTCGGGACCCACCTGTGAACGCTGCCCTACCTGTGGAGACCCCTGTAACTCGAGACG
Seq A exon
GAGCTGCATCGAGTGCTACCTGTCTGCAGATGGCCAGGCCCAAGAAGAGTGCGAGGACAAGTGCAAAGCCACCGGTGCCACCATCAGTGAGGAAG
Seq C2 exon
AGTTTTCAAAGGATACTTCTGTCCCCTGCTCGCTACAAGGAGAAAATGAATGTCTTATTACATTCCTAATAACTGCGGATAATGAAGGGAAAACCATCATTCACAACATCAGTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008346-'19-17,'19-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTCTGCAGAAACCCTGG
R:
TGGTTTTCCCTTCATTATCCGCA
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]